User Storage Space Still Showing Full After Emptying

Nextcloud version: 24.0.9
Operating system and version: Rocky Linux 8.7
Apache or nginx version: nginx/1.23.2
PHP version: 7.4.30

The issue you are facing:

User storage quota not reflecting actual use. Showing 10GB quota exceeded, yet also shows space available.

user@nextcloud $ occ user:info *****
  - user_id: *****
  - display_name: ******
  - email: ******@******.******
  - cloud_id: ******@******.******.******
  - enabled: true
  - groups:
  - quota: 10 GB
  - storage:
    - free: 8645960109
    - used: 13500149577
    - total: 10737418240
    - relative: 125.73
    - quota: 10737418240
  - last_seen: 2023-01-25T05:55:44+00:00
  - user_directory: /ncdata/data/******
  - backend: Database

Is this the first time you’ve seen this error? (Y/N): Y

Steps to replicate it: (End-user supplied)

  1. A large file caused account to go over disk space quota.
  2. Deleted the file and cleared the deleted files.
  3. Still unable to make any changes.

Additionally, I’ve tried clearing filecache, re-indexing user, clearing orphaned mounts, expiring versions and purging them, clearing trashbins, cleaning dav mounts, and just about anything in the occ command that says “clear” or “clean/cleanup”.

The output of your Nextcloud log in Admin > Logging:

N/A

The output of your config.php file in /path/to/nextcloud (make sure you remove any identifiable information!):

<?php
$CONFIG = array (
  'instanceid' => '*****',
  'passwordsalt' => '*****',
  'secret' => '*****',
  'trusted_domains' => 
  array (
    0 => '*****',
    1 => '*****',
    2 => '*****',
    3 => 'localhost',
    4 => ''*****',
  ),
  'datadirectory' => '*****',
  'dbtype' => 'mysql',
  'version' => '24.0.9.2',
  'overwrite.cli.url' => 'https://******',
  'overwriteprotocol' => 'https',
  'htaccess.RewriteBase' => '/',
  'dbname' => '*****db',
  'dbhost' => '*******',
  'dbport' => '****',
  'dbtableprefix' => '**_',
  'mysql.utf8mb4' => true,
  'dbuser' => '*****',
  'dbpassword' => '*****',
  'installed' => true,
  'filesystem_check_changes' => 1,
  'default_phone_region' => 'US',
  'loglevel' => 2,
  'log_rotate_size' => '209715200',
  'logtimezone' => 'America/Phoenix',
  'logfile' => '/a/location/log/nextcloud.log',
  'trashbin_retention_obligation' => 'auto, 30',
  'remember_login_cookie_lifetime' => 1296000,
  'session_lifetime' => 86400,
  'session_keepalive' => true,
  'theme' => 'mytheme',
  'simpleSignUpLink.shown' => false,
  'mail_smtpauthtype' => 'LOGIN',
  'mail_smtpsecure' => 'tls',
  'mail_smtpauth' => 1,
  'mail_smtphost' => 'smtp.*******',
  'mail_smtpport' => '587',
  'mail_smtpname' => 'no-reply@****',
  'mail_smtppassword' => '******',
  'mail_from_address' => 'noreply',
  'mail_smtpmode' => 'smtp',
  'mail_domain' => 'mydomain.com',
  'memcache.local' => '\\OC\\Memcache\\APCu',
  'redis' => 
  array (
    'host' => '127.0.0.1',
    'port' => '6379',
  ),
  'memcache.locking' => '\\OC\\Memcache\\Redis',
  'filelocking.enabled' => true,
  'filelocking.ttl' => 3600,
  'hashingThreads' => 12,
  'hashingMemoryCost' => 128,
  'hashingTimeCost' => 6,
  'hashingCost' => 10,
  'xframe_restriction' => false,
  'customclient_desktop' => '*****',
  'customclient_android' => 'https://play.google.com/store/apps/details?id=****',
  'enable_previews' => 'true',
  'preview_libreoffice_path' => '/usr/bin/libreoffice',
  'preview_office_cl_parameters' => ' --headless --nologo --nofirststartwizard --invisible --norestore --convert-to png --outdir ',
  'enabledPreviewProviders' => 
  array (
    0 => 'OC\\Preview\\PNG',
    1 => 'OC\\Preview\\JPEG',
    2 => 'OC\\Preview\\GIF',
    3 => 'OC\\Preview\\HEIC',
    4 => 'OC\\Preview\\BMP',
    5 => 'OC\\Preview\\XBitmap',
    6 => 'OC\\Preview\\MP3',
    7 => 'OC\\Preview\\TXT',
    8 => 'OC\\Preview\\MarkDown',
    9 => 'OC\\Preview\\OpenDocument',
    10 => 'OC\\Preview\\Krita',
    11 => 'OC\\Preview\\PDF',
    12 => 'OC\\Preview\\Photoshop',
    13 => 'OC\\Preview\\Movie',
    14 => 'OC\\Preview\\TIFF',
    15 => 'OC\\Preview\\MSOfficeDoc',
    16 => 'OC\\Preview\\Illustrator',
    17 => 'OC\\Preview\\SVG',
  ),
  'mail_sendmailmode' => 'smtp',
  'app_install_overwrite' => 
  array (
    0 => 'end_to_end_encryption',
    1 => 'telephoneprovider',
    2 => 'extract',
    3 => 'files_external_gdrive',
    4 => 'keeweb',
    5 => 'passman',
    6 => 'files_clipboard',
    7 => 'files_external_onedrive',
    8 => 'whmcsintegration',
    9 => 'rainloop',
    10 => 'impersonate',
    11 => 'checksum',
    12 => 'admin_notifications',
    13 => 'socialsharing_diaspora',
    14 => 'socialsharing_email',
    15 => 'socialsharing_facebook',
    16 => 'socialsharing_twitter',
    17 => 'social',
    18 => 'files_external_dropbox',
    19 => 'clientintegration',
    20 => 'external',
    21 => 'emlviewer',
    22 => 'dicomviewer',
    23 => 'twofactor_totp',
    24 => 'twofactor_admin',
    25 => 'printer',
    26 => 'groupfolders',
    27 => 'cookbook',
    28 => 'podcast',
    29 => 'announcementcenter',
    30 => 'radio',
  ),
  'updater.release.channel' => 'stable',
  'data-fingerprint' => '***********',
  'maintenance' => false,
  'enable_file_metadata' => true,
  'has_rebuilt_cache' => true,
  'encryption.legacy_format_support' => false,
  'trusted_proxies' => 
  array (
    0 => '127.0.0.1',
    1 => '::1',
    2 => '***********',
    3 => '***********',
  ),
  'ncd_admin_settings' => 
  array (
    'ncd_disable_bt' => '1',
  ),
);

The output of your Apache/nginx/system log in /var/log/____:

N/A