Search works ok but links are incorrect

So I got fulltextsearch working and ran the initial index. Search works OK, and returns an appropriate list of documents. However, if I click on a link, it redirects me to a broken link. Apache gives me an error The requested URL /index.php/apps/files/ was not found on this server. The problem is that on my setup the correct link would be /nextcloud/index.php/apps/files/

I don’t see anywhere in settings that this can be changed. Anyone run into this same problem? Any suggestions on how I can fix this?

known bug, fixed in 0.6 which will be release hopefully next week