Disable virtual files support after system crash

Hello, i have used virtual files on my laptop when my server died, i have all the files on the server, and some new files on my desktop.
What i need to do
1: Copy all files from my old server to a new server
2: Copy all files from my local PC to a new server to overwrite the changes.

The question i have i simple, i have a virtual filesystem enabled, so most of the files are just links to my old nextcloud server, if i disable the virtual file support, they will just dissapear ? (this is what i need)

Thank you