I have multiple drives in the server but it only stores in the / one. How can i use the remaining two drives to save it?

You need to point your data directory to /home, then it goes to your large harddisk

Should be in your config
I don’t think that you can use more than one drive at the same time

Some instructions to read:

HowTo: Change / Move data directory after installation - :bookmark_tabs: How to - Nextcloud community