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Nextcloud version (eg, 20.0.5): 25.0.3.2
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The issue you are facing:
I changed the Nextcloud Theming colour, but it only seems to apply to any new accounts created, the original account remains on the default colour.
It seems that I have similar issue. I believe when I created the first user, I had really dark Color set in Theming of Administration Settings. Now I cannot see some of the icons, e.g.:
I was under the impression that this tile changes the background to given color, but it has nothing to do with background - this is the override of the default Theming → Color setting.
I had this set to dark blue, that’s why changes to Color in admin panel had no effect on my user’s icon colors